Gluten Free Morning Glory Muffins (Healthy & Moist)

These gluten free morning glory muffins are one of those recipes you make once and then add to your forever collection.

They’re lightly sweet, packed with carrots, apple, nuts, and warm spices, and kids love them. Finally, a healthy gluten-free muffin recipe with no weird ingredients and no dry, crumbly texture. It’s a solid make-ahead breakfast or snack that works for busy mornings.

Gluten free morning glory muffins made with carrots, apple, warm spices, and pecans stacked on a wooden board.

If you need something you can grab on the way out the door or toss into a lunchbox without thinking, this is it.

If you’re as big a muffin fan as I am, don’t miss out on these delicious Gluten Free Apple Muffins.

Disclosure: This post contains affiliate links for your convenience. As an Amazon Associate, I earn from qualifying purchases.

What You’ll Love About These Muffins

  • Naturally sweetened with coconut sugar, honey, applesauce, and molasses
  • Packed with veggies and fruit without tasting like it
  • heart iconGluten free and dairy free but still fluffy and moist
  • Great for breakfast, snacks, or pre-workout fuel
  • They store well, so you can bake once and eat all week

Ingredients You’ll Need

ingredients laid out for the gluten free morning glory muffins

Dry ingredients

  • Gluten-free flour (I used Bob’s Red Mill 1:1 – the blue bag)
  • baking soda
  • ground cinnamon
  • ground ginger
  • salt

Wet Ingredients

  • eggs
  • coconut sugar
  • honey
  • olive oil
  • unsweetened applesauce
  • molasses
  • orange zest
  • orange juice
  • vanilla extract
  • grated carrots
  • grated apple

Mix-Ins

  • raisins
  • unsalted chopped pecans

Ingredient Substitutions

  • Raisins → dried cranberries
  • Pecans → walnuts or omit
  • Orange juice → milk or almond milk
  • olive oil → avocado oil

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How to Make Gluten Free Morning Glory Muffins

  1. Preheat the oven to 350 degrees and line a muffin tin.
  2. In a large bowl, mix the dry ingredients.
  3. In a separate bowl, whisk together the wet ingredients.
  4. Combine wet and dry ingredients until just mixed.
  5. Fold in the carrots, apple, raisins, and pecans.
  6. Divide batter into muffin cups.
  7. Bake for 33 minutes, or until a toothpick comes out clean.
  8. Let cool before serving.
Inside of a gluten free morning glory muffin showing a moist crumb with carrots, apple, and nuts.
Soft and fluffy

Storage & Meal Prep Tips

  • Store the carrot apple muffins in an airtight container or a Ziploc bag, in the fridge for up to 7 days.
  • You can also freeze the muffins for up to 3 months, but make sure they’re fully cooled first.

I love making these as a meal prep snack for my daughter’s lunches at school, or an easy grab-and-go breakfast for busy mornings. They’re a lifesaver on mornings I teach Pilates and need something quick but healthy for the kids.

Need more meal prep ideas for breakfast? Try these High Protein Dairy Free Breakfasts.

Gluten free morning glory muffins arranged on a wooden board, freshly baked and ready to serve.

FAQs

Yes. These muffins are naturally sweetened with coconut sugar, honey, applesauce, and molasses. They’re packed with carrots, apple, nuts, and healthy fats, which makes them more filling than most bakery style muffins.

Yes. Let the muffins cool completely, then store them in a freezer-safe container or bag. Freeze for up to 3 months. Thaw overnight in the fridge or warm slightly before eating.

Dry gluten free muffins are usually caused by overbaking or overmixing. Make sure to gently mix the batter and remove the muffins once a toothpick comes out clean.

Store these muffins in an airtight container in the fridge for up to 7 days. They also freeze well for longer storage.

This recipe is already dairy free, yay!

gluten free muffins on a cutting board

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Gluten Free Morning Glory Muffins

gluten free morning glory muffins stacked on top of each other

Video

These gluten free morning glory muffins are made with carrots, apple, warm spices, and nuts. A healthy, make-ahead breakfast or snack that stores well all week.
Prep Time 12 minutes
Cook Time 33 minutes
Total Time 45 minutes
14 servings

Ingredients

Dry Ingredients

  • 2 cups gluten free all purpose flour with xantham gum I used Bob's Red Mill 1:1 (the blue bag)
  • 2 teaspoons baking soda
  • 2 teaspoons ground cinnamon
  • 1/2 teaspoon ground ginger
  • 1/2 teaspoon salt

Wet Ingredients

  • 3 large eggs
  • 1/2 cup coconut sugar
  • 1/4 cup honey
  • 1/3 cup olive oil
  • 1/3 cup unsweetened applesauce
  • 1 tablespoon molasses
  • 1 teaspoon orange zest
  • 1/3 cup orange juice
  • 1 teaspoon vanilla extract
  • 2 cups shredded carrots about 4 large
  • 1 cup shredded apple about 1 large

Mix ins

  • 1/2 cup raisins
  • 3/4 cup unsalted chopped pecans

Instructions

  • Preheat oven to 350℉. Line a muffin tin with liners.
  • In a large bowl, whisk together the dry ingredients and set aside.
    2 cups gluten free all purpose flour with xantham gum, 2 teaspoons baking soda, 2 teaspoons ground cinnamon, 1/2 teaspoon ground ginger, 1/2 teaspoon salt
  • In a medium sized bowl, stir together the wet ingredients and mixins.
    3 large eggs, 1/2 cup coconut sugar, 1/4 cup honey, 1/3 cup olive oil, 1/3 cup unsweetened applesauce, 1 tablespoon molasses, 1 teaspoon orange zest, 1/3 cup orange juice, 1 teaspoon vanilla extract, 2 cups shredded carrots, 1 cup shredded apple, 1/2 cup raisins, 3/4 cup unsalted chopped pecans
  • Make a well in the center of the dry ingredients and pour in the wet ingredients plus the mixins. Stir and fold the ingredients together until combined.
  • Bake for 30-33 minutes. You can also check by poking a toothpick in the center of a muffin, and if it pulls out clean, it's done.
  • There will be enough batter for a few extra muffins or a batch of mini muffins as well. Mini muffins take 28-30 minutes in the oven.
  • Allow to cool before eating

Notes

Keeps well in an airtight container in the fridge for up to 7 days.
There should be enough batter for a batch of mini muffins too, you can bake those for 28-30 minutes.
Not gluten free? You can swap the flour for whole wheat flour or white flour.

Nutrition

Serving: 1muffinCalories: 232kcalCarbohydrates: 33gProtein: 4gFat: 11gSaturated Fat: 1gPolyunsaturated Fat: 2gMonounsaturated Fat: 7gTrans Fat: 0.004gCholesterol: 35mgSodium: 279mgPotassium: 191mgFiber: 4gSugar: 13gVitamin A: 3129IUVitamin C: 5mgCalcium: 36mgIron: 1mg
AuthorRanda Derkson

Don’t forget to add a pat of butter. There’s nothing better then a warm muffin with fresh butter.

Gluten free morning glory muffin cut in half with butter on top, showing a soft carrot apple muffin texture.

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2 Comments

5 from 1 vote

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